2026​
  • Pereira-Romeiro, M. P., Mori, G. M., & Marquitti, F. M. D. 2026. Range shifts of Eastern South American mangroves in a changing climate. bioRxiv, 2026-06.
  • Barreto Campos, A., de Knegt López de Prado, P. I., & Marquitti, F. M. D. 2026. Delayed predator response increases ecosystem’s vulnerability to collapse under a changing environment. bioRxiv, 2026-04.
  • Marcelo, V. G., Marquitti, F., Vallejo-Marín, M., & Brito, V. L. G. D. B. 2026. Grooming intensity and stigma position alter the mating network among plants. Ecological Modelling, 521: 111713.

2025
  • Hissa, L. D., Marquitti, F., & de Aguiar, M. A. 2025. Speciation by local adaptation and isolation by distance in extended environments. arXiv preprint arXiv:2508.06719.

2024 2023
  • Vasconcelos, V. V., Marquitti, F., Ong, T., McManus, L. C., Aguiar, M., Campos, A. B., ... & Zhan, Q. 2023. Rate-Induced Transitions in Networked Complex Adaptive Systems: Exploring Dynamics and Management Implications Across Ecological, Social, and Socioecological Systems. arXiv preprint arXiv:2309.07449.
  • D’Bastiani, E., Princepe, D., Marquitti, F. M., Boeger, W. A., Campião, K. M., & Araujo, S. B. 2023. Effect of host-switching on the ecological and evolutionary patterns of parasites. Systematic Biology 74, 912-924.
  • Ferreira, L.S.,Marquitti, F.M.D., da Silva, R.L.P., Borges, M.E., Gomes, M.F., Cruz, O.G., Kraenkel, R.A., Coutinho, R.M., Prado, P.I. & Bastos, L.S. 2023. Estimating the impact of implementation and timing of the COVID-19 vaccination programme in Brazil: a counterfactual analysis. The Lancet Regional Health–Americas, 17.

2022
  • Princepe, D., Czarnobai, S., Pradella, T.M., Caetano, R.A., Marquitti, F.M.D., de Aguiar, M.A.M. & Araujo, S.B.L. 2022. Diversity patterns and speciation processes in a two-island system with continuous migration. Evolution 76, 2260-2271. 
  • Botelho, L. L., Marquitti, F. M. D., & de Aguiar, M. A. 2022. Extinction and hybridization in a neutral model of speciation. Journal of Physics A: Mathematical and Theoretical 55(38), 385601.
  • Lima, T. R. A., Martins, F. R., Menezes, B. S., Marquitti, F. M. D., Sfair, J. C., Silveira, A. P., & Araújo, F. S. 2022. The stress gradient hypothesis explains plant-plant interaction networks in edapho climatic gradients. Acta Oecologica 115, 103831.
  • Souto Ferreira, L., Canton, O., da Silva, R. L. P., Poloni, S., Sudbrack, V., Borges, M. E., Franco,C. Marquitti, F. M. D., de Moraes, J.C., Veras,M. A. S. M., Kraenkel, R. A. & Coutinho, R. M. 2022. Assessing the best time interval between doses in a two-dose vaccination regimen to reduce the number of deaths in an ongoing epidemic of SARS-CoV-2. PLoS Computational Biology 18(3), e1009978.

2021
  • Coutinho, R. M., Marquitti, F. M. D., Ferreira, L. S., Borges, M. E., da Silva, R. L. P., Canton, O., Portella, T. P., Poloni, S., Franco, C., Plucinski, M. M., Lessa, F. C., Silva, A. A. M., Kraenkel, R. A. Veras, M. A. S. M. & Prado, P. I. 2021. Model-based estimation of transmissibility and reinfection of SARS-CoV-2 P. 1 variant. Communications Medicine 1(1), 1-8.
  • Maia, K. P., Marquitti, F. M., Vaughan, I. P., Memmott, J., & Raimundo, R. L. 2021. Interaction generalisation and demographic feedbacks drive the resilience of plant–insect networks to extinctions. Journal of Animal Ecology 90(9), 2109-2121.
  • Franco, G. D., Marquitti, F. M. D., Fernandes, L. D., Braha, D. & de Aguiar, M. A. M. 2021. Shannon information criterion for low-high diversity transition in Moran and voter models. Physical Review E 104(2), 024315.
  • Marquitti, F. M. D., Coutinho, R. M., Ferreira, L. S., Borges, M. E., Portella, T. P., Silva, R. L. P. D., Canton, O. , Poloni, S., Franco, C., Coelho, V., Barberia, L., de Bolle, M., Boing, A. C., Donalisio, M. R., Boing, A. F.,  da Silva, A. A. M., Prado, P. I., Veras, M. A. S. M. & Kraenkel, R. A. 2021. Brazil in the face of new SARS-CoV-2 variants: emergencies and challenges in public health. Revista Brasileira de Epidemiologia 24, e210022.
​
2020
  • Marquitti, F.M.D.; Fernandes, L.D. & de Aguiar, M.A.M. 2020. Allopatry increases the balance of phylogenetic trees during radiation under neutral speciation. Ecography 43 (10), 1487-1498. 
  • Araújo Lima, T., Marquitti, F., & de Aguiar, M. A. 2020. Measuring Tree Balance with Normalized Tree Area. arXiv e-prints, arXiv-2008.
  • Raimundo, R., Maia, K., Muniz, D., Cantor, M., Guimarães Jr, P., Lemos-Costa, P., Santana, E., Gaiarsa, M., Santana, P., Giacobelli, L., Assis, A.P., Birskis-Barros, I., Medeiros, L., Marquitti, F., Dáttilo, W., Andreazzi, C., Pires, M.,Velásquez, V. & Migon, E. 2020. Vulnerabilidade das microrregiões do Nordeste brasileiro à pandemia do novo coronavírus (SARS-CoV-2). SciELO Preprints: https://preprints.scielo.org/index.php/ scielo/preprint/view/35/version/39
  • Gaiarsa, M.P., Marquitti, F.M.D., Lemos-Costa, P., Burin, G., Medeiros, L.P., Velásquez, V.M., Santana, P.C., Santana, E.M., Maia, K.P., Muniz, D, Cosmo, L.G., Assis,A.P.A., Birskis-Barros, I., Cantor, M., Emer, C., Andreazzi, C.S., Pires, M.M., Côrtes, M.C., Melo, D., D áttilo, W.F., Raimundo, R.L.G., Migon, E. X. F.G. & Guimarães, P.R. 2020. Vulnerabilidade estrutural dos hospitais e cemitérios e crematórios da cidade de São Paulo à COVID-19.SciELO Preprints: https://doi.org/10.1590/SciELOPreprints.381.
  • Emer, C., Maia, K. P., Santana, P. C., Santana, E. M., da Silva, D. G., Cosmo, L. G., Assis, A. P. A., Burin, G, Cantor M., Lemos-Costa, P. Velásquez, V. M., Birskis-Barros, I., Gaiarsa, M. P., Medeiros, L. P.; Marquitti, F. M. D.; Côrtes, M. C.; Dáttilo, W. F, Andreazzi, C. S., Pires, M. M.; Melo, D, Migon, E. X. F. G.; Raimundo, R. L, G. & Guimarães Jr, P. 2020. Vulnerability of the micro-regions of the South of Brazil to the new coronavirus (SARS-CoV-2) pandemic. SciELO Preprints: https://doi.org/10.1590/SciELOPreprints.128. 
​
2019
  • Costa, C. L., Lemos-Costa, P., Marquitti, F. M., Fernandes, L. D., Ramos, M. F., Schneider, D. M., ... & de Aguiar, M. A. 2019. Signatures of microevolutionary processes in phylogenetic patterns. Systematic Biology 68(1), 131-144.

2018
2017
  • Pires, M. M., F.M.D. Marquitti, P. R. Guimaraes. 2017. The friendship paradox in species-rich ecological networks: implications for conservation and monitoring. Biological Conservation 209: 245-252.
  • Barreto, W.P., F.M.D. Marquitti, and M. A. M .de Aguiar. 2017. A genetic approach to the Rock-Paper-Scissors game. Journal of Theoretical Biology 421: 146–152.
  • Cantor, M., Pires, M.M., Marquitti, F.M.D., Raimundo, R. L., Sebastián-González, E., Coltri, P. P., Ivan-Perez, S., Barneche, D.R., Brandt, D.Y. C. , Nunes, K, Daura-Jorge, F. G., Floeter, S.R. & Guimarães Jr., P.R. 2017. Nestedness across biological scales. PloS One 12(2): e0171691.

2016
2015
  • Ashikaga, H., Aguilar-Rodríguez, J., Gorsky, S., Lusczek, E., Marquitti, F.M.D., Thompson, B. Wu, D., Garland, J. 2015. Modeling the heart as a communication system. Journal Royal Society Interface 12(2): 20141201.
  • Mello, M. A. R., Rodrigues, F. A., Costa, L. D. F., Kissling, W. D., Şekercioğlu, Ç. H., Marquitti, F. M. D., & Kalko, E. K. V. 2015. Keystone species in seed dispersal networks are mainly determined by dietary specialization. Oikos 124: 1031-1039.

2014
  • Marquitti, F. M. D., P. R. Guimaraes, M. M. Pires, L. F. Bittencourt. 2014. MODULAR: Software for the Autonomous Computation of Modularity in Large Network Sets. Ecography 37: 221–224.
  • Dáttilo, W., F. M. D. Marquitti, P. R. Guimaraes, T. J. Izzo. 2014. The structure of ant-plant ecological networks: is abundance enough?. Ecology 95: 475–485.

2012
  • Hagen, M., W. D. Kissiling, C. Rasmussen, M. A. M. de Aguiar, L. Brown, D. W. Carstensen, I. Alves-dos-Santos, Y. L. Dupont, F. K. Edwards, J. Genini, P. R. Guimaraes, G. B. Jenkins, P. Jordano, C. N. Kaiser-Bunbury, M. Ledger, K. P. Maia,F. M. D. Marquitti, O. McLaughlin, L. P. C. Morellato, E. J. O'Gorman, K. Trojelsgaard, J. M. Tylianakis, M. M. Vidal, G. Woodward, J. Olesen. 2012. Biodiversity, species interactions and ecological networks in a fragmented world. Advances in Ecological Research 46: 89-210.
  • Tinker, M. T., P. R. Guimaraes, M. Novak, F. M. D. Marquitti, J. Bodkin, M. Staedler, G. Bentall, J. Estes. 2012. Structure and mechanism of diet specialization: testing models of individual variation in resource use with sea otters. Ecology Letters 15: 475-483.

2011
  • Donatti, C.I., P. R. Guimaraes, M. Galetti, M. A. Pizo, F. M. D. Marquitti, R. Dirzo. 2011. Analysis of a hyper-diverse seed dispersal network: modularity and underlying mechanisms. Ecology Letters 14:773-781.
  • Mello, M. A.R, F. M. D. Marquitti, P. R. Guimaraes, E. K. V. Kalko, P. Jordano, M. A. M. de Aguiar. 2011. The missing part of seed dispersal networks: structure and robustness of bat-fruit interactions. PLoS ONE 6: e17395.
  • Mello, M. A.R, F. M. D. Marquitti, P. R. Guimaraes, E. K. V. Kalko, P. Jordano, M. A. M. de Aguiar. 2011. The modularity of seed dispersal: differences in structure and robustness between bat - and bird - fruit networks. Oecologia 167: 131-140.

2008-2010
  • Mello, M. A.R., F.M. D. Marquitti, P. R. Guimaraes, E.K.V. Kalko, P. Jordano. 2008. Small differences may lead to big consequences: bat and bird seed dispersal networks (Abstract, Luis F Barcardi Award 2008). Biotropica 40: 777-777.
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